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Learning Resources

Curated tools, libraries, and datasets for digital crop phenotyping, 3D reconstruction, and AI-driven precision agriculture.

Plant Phenotyping & Modeling

PlantCV
Open-source Python toolkit for plant image analysis and high-throughput phenotyping.
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Fiji (ImageJ)
Powerful image processing platform with a vast ecosystem of biological research plugins.
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OpenSimRoot
Structural-functional plant model for simulating root system architecture and nutrient uptake.
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BioCro
R package for predicting crop growth and yield under changing environmental conditions.
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AI Engineering & Agentic Systems

Model Context Protocol (MCP)
The open standard from Anthropic for connecting AI assistants to systems and data.
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LangGraph
Library for building stateful, multi-actor applications with LLMs, built on top of LangChain.
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CrewAI
Framework for orchestrating role-playing, autonomous AI agents (Agent-to-Agent collaboration).
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Dify
Open-source LLM app development platform for orchestration, workflows, and agent management.
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Microsoft AutoGen
Framework for enabling next-gen LLM applications with multi-agent conversation.
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LlamaIndex
Data framework for connecting custom data sources to large language models.
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Computer Science Education

MIT OpenCourseWare (EECS)
The gold standard for open CS education. Featured: 6.006 (Algo), 6.0001 (Python).
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Stanford CS224n
Natural Language Processing with Deep Learning. Essential for understanding LLMs.
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UC Berkeley CS61A
Structure and Interpretation of Computer Programs. The best introductory CS course.
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Harvard CS50
Introduction to Computer Science. Renowned for its pedagogical excellence.
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Remote Sensing & GIS

OpenDroneMap
A command line toolkit to generate maps, point clouds, 3D models and DEMs from drone, balloon or kite images.
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Google Earth Engine
A planetary-scale platform for Earth science data & analysis.
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NASA Earthdata
Open access to NASA's Earth science data collections.
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QGIS
A Free and Open Source Geographic Information System.
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3D & Computer Vision

Open3D
A Modern Library for 3D Data Processing.
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CloudCompare
3D point cloud and mesh processing software.
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OpenCV
Open Source Computer Vision Library.
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