3 posts tagged with "Python"

Project Overview​

This tutorial introduces a powerful standalone Python tool for agricultural image quantification analysis. The tool provides automated detection and measurement of plant samples from images, including morphological and color metrics.

Overview​

Root Quantify is a Python-based tool designed for processing root system images. It provides a complete pipeline for analyzing root images with the following capabilities:

Key Features:​

• Batch Processing: Automatically iterates through all images in a selected folder
• Interactive ROI Selection: Users click to select polygon vertices to define the region of interest (ROI)
• Digital Image Processing: Performs background estimation, shadow removal, binarization, and inversion
• Manual Correction: Allows manual editing of processed ROI with adjustable brush size
• Dual-Window Preview: Left window shows original image, right window handles ROI selection and processing
• Automatic Archiving: Saves processed images and moves originals to prevent reprocessing

Project Overview​

This playbook outlines a reproducible workflow for Python-focused research—ideal for data analysis, remote sensing, crop modeling, and computational plant science. Follow the sections in order or jump to the one you need.