Root Quantify: Python-Based Root System Image Processing Tool
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Overview
Root Quantify is a Python-based tool designed for processing root system images. It provides a complete pipeline for analyzing root images with the following capabilities:
Key Features:
- Batch Processing: Automatically iterates through all images in a selected folder
- Interactive ROI Selection: Users click to select polygon vertices to define the region of interest (ROI)
- Digital Image Processing: Performs background estimation, shadow removal, binarization, and inversion
- Manual Correction: Allows manual editing of processed ROI with adjustable brush size
- Dual-Window Preview: Left window shows original image, right window handles ROI selection and processing
- Automatic Archiving: Saves processed images and moves originals to prevent reprocessing
